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Daniel Antonio Garrido Cortes

Associate Professor

Pontificia Universidad Católica de Chile

Santiago, Chile

Research areas and interests: Food microbiology, Functional Foods, Prebiotics and Probiotics, Gut microbiome in health and metabolic diseases, microbiome therapeutics, Systems and Synthetic Biology,

Food Science, emphasis in Biotechnology, UNIVERSITY OF CALIFORNIA- DAVIS. Estados Unidos, 2012
Engineering in Molecular Biotechnology, UNIVERSIDAD DE CHILE. Chile, 2005
University Teaching, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2018

Assistant Professor Full Time

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Engineering

Santiago, Chile

2013 - 2018
Postdoctoral researcher Full Time

UNIVERSITY OF CALIFORNIA- DAVIS

Food Science and Technology

Davis, Estados Unidos

2012 - 2013
Associate Professor Full Time

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Engineering

Santiago, Chile

2019 - A la fecha

Postdoctoral Researcher Full Time

University of California Davis

Davis, Estados Unidos

2012 - 2013
Consultant Part Time

Evolve Biosciences

San Francisco, Estados Unidos

2012 - 2013
Teaching Assistant Part Time

University of California, Davis

Davis, Chile

2008 - 2011
Director Departamento Full Time

Pontificia Universidad Católica de Chile

Chile

2023 - A la fecha
Jefe Major en Ingeniería Biológica Full Time

Pontificia Universidad Católica de Chile

Chile

2020 - A la fecha
Miembro Comité Institucional Bioseguridad Part Time

Pontificia Universidad Católica de Chile

Chile

2022 - 2022

Postdoctoral researchers
Dr. Daniel Medina 2016-2018
Dr. Pamela Thomson 2017-2020
Dr. Arles Urrutia 2021-2022

Graduated, Ph.D. in Engineering Sciences, Pontificia Universidad Catolica de Chile
Juan José Fuentes, 2014-2019 “Genomic Characterization of Cylindrospermopsis Raciborskii a Cyanobacterium Able to Produce Bioactive Compounds”
Rodrigo Santibáñez, 2016-2020 “Development of rule-based models for regulatory mechanisms of gene expression and bacterial metabolism”
Romina Díaz, 2018-2023 “Characterization of metabolic interactions mediated by human milk oligosaccharides for the identification of key species in the infant gut microbiome”
Marco Vega, 2018-2023 “Caracterización de las Interacciones Metabólicas entre Bacterias del Microbioma Intestinal Durante la Utilización de Fibras Dietéticas”

Ph.D. students in progress
Kevin González (U. de Cartagena, Colombia), 2018-to date
Alvaro Altamirano, 2019 to date
Aline Ovalle, 2019 to date
Alexis Torres, 2019 to date
Felipe Melis, 2020 to date
Claudia Silva (codirección; Universidad Mayor, Doctorado Genómica Integrativa)
Joaquín Gutiérrez (codirección; Doctorado Ciencias Biológicas PUC)
Javiera Vásquez, 2023 to date
Enso Torres, 2023 to date
Andrea Marimán, 2023 to date (Ph.D. in Biological and Medical Engineering)

Graduated, Master in Engineering Sciences, Pontificia Universidad Catolica de Chile
Aline Ovalle, 2014-2016, graduated. “Interacciones Mediadas por Prebióticos en un Consorcio Modelo del Microbioma Intestinal Infantil”
Francisco Pinto, 2014-2017, graduated. “Construcción de un Modelo Dinámico Basado en Interacciones Metabólicas entre Especies del Microbioma Intestinal”
Natalia Gutiérrez, 2016-2018, graduated. “Deleción de Especies desde un Consorcio de Microbioma Intestinal Sugiere Interacciones Metabólicas Claves entre Microorganismos”
María José Barra, 2019-2021, graduated. “Engineered bacteria for propionate-repressed expression of sfGFP and GM-CSF”
Belén Hirmas, 2019-2021, graduated. “Bi-directional cultures reveal metabolic cross-feeding between gut commensals”
Loreto Román, 2019-2021, graduated. “Genome-Scale Metabolic Modeling of the Human Milk Oligosaccharide Utilization by Bifidobacterium Longum Subsp. Infantis”
Guillermo Orellana, 2019-2021, graduated. “Modelamiento a Escala Genómica de las Interacciones Metabolicas entre Microorganismos Comensales y Productores de Butirato”
Kineret Serebrinsky, 2020-2022, graduated. “Diseño de un Circuito Génico para la Expresión de sfGFP y GM-CSF Reprimida por Butirato”
Tomás Proschle, 2021-2023, graduated. “Análisis bioinformático y modelación matemática de un consorcio microbiano infantil bajo el consumo de oligosacáridos de leche materna”.

Masters Students In progress
Paula Lobos
Tays Troncoso
Roberto Luarte
Francisca Becker
Pablo Caballero
Liliana Peña
Andrés Canales

Undergraduate Research students, Civil Engineering in Biotechnology
Gonzalo Alcaíno
Andrés Cisneros
Ignacia Cancino
Alexis Suárez
Francisco Pedreros
Guillermo Orellana
María José Barra
Bárbara Coloma
Francisca Rojas
Rosa Godoy
Martín Silva
Daniela Contador
Ricardo Leiva
Adolfo Godoy 2021
Tomás Proschle 2021
Paula Lobos 2021
Rocío Arratia 2022
María José Santibáñez 2022
Tays Troncoso 2022
Andrés Canales 2022
Diego Ulloa 2022
Kaina Galdames 2022
Michelle Gibert 2022
Lucas Lagos 2022
Daniel Lagos 2022
Fernanda Flores 2022
Aarón Velásquez 2023
Sebastián Cordero 2023
Alonso Palma 2023
Ignacio Neira 2023
Luz Elena Moya 2023

Undergraduate thesis, Biochemistry
Samantha Nuñez
Camila Solar
Juan Paulo Pedreros
Amalia Candia
Valentina Briones
Monserrat Díaz
Simón Rojas
Benjamín Guzmán
Sebastián Ávila

Visiting Students
Taylor Hinchliffe, Columbia University

Participación en programas Conicyt: "Un Dia con un Científico" y programa Explora dictando charlas educaciones a alumnos de educación media.
Difusión de carreras en ingeniería química y biotecnología a alumnos visitantes del programa Embajadores Ingeniería UC (Instituto O'Higgins de Rancagua, Instituto Nacional, Colegio Internacional Sek Chile, Liceo José Toribio Medina, entre otros)

Panamerican Bimbo Award

Bimbo

Estados Unidos, 2013

Bimbo Award 2013, award to the best thesis in human nutrition, United States area. Dissertation title: A molecular basis for the enrichment of bifidobacteria in the infant gastrointestinal tract”
Young Investigator Oral Presentation Award

American Societies for Microbiology

Estados Unidos, 2012

Young Investigator Oral Presentation Award. 111th Annual Meeting of the Association of Societies of Microbiology, San Francisco, CA, June 2012.
National Dairy Leadership Scholarship Award.

National Milk Producers Federation

Estados Unidos, 2011

National Milk Producers Federation (NMPF) National Dairy Leadership Scholarship Award. July 2011. Awarded to the most qualified doctoral students in dairy-related sciences in the US.
Fulbright-CONICYT scholarship

Comisión Fulbright

Chile, 2006

Fulbright-CONICYT scholarship for doctoral programs in the U.S. Ministry of Education and Fulbright Chile Commission, 2006.
UCDavis Chile Fellow

UNIVERSITY OF CALIFORNIA- DAVIS

Chile, 2017

Premio destacada trayectoria Ex-alumnos chilenos de UC Davis
Malaspina International Scholar Travel (MIST) 2019 Award

International Life Sciences Institute

Estados Unidos, 2018

Malaspina International Scholar Travel (MIST) 2019 Award, by the International Life Sciences Institute. One of six worldwide scholarships to support travel and engage early-career, academic scientists at the ILSI Annual Meeting and Scientific Symposium.
Associate Editor mSystems

American Societies for Microbiology

Estados Unidos, 2020

Parte del board of editors de la revista mSystems, parte de ASM
Associate Editor Frontiers in Microbiology

Frontiers

Suiza, 2021

Selected as Associate Editor for this journal. Edit 12-15 papers per year.
Associate Editor - Probiotics and Antimicrobial Proteins

Springer publishers

Chile, 2022

Selected as associate editor for this journal. Edit 10 papers a year.
Excellence in Research Award

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Chile, 2023

Awarded to the academic, within the School of Engineering at PUC, with the highest number of publications, projects and citations, in the period 2020-2022
Scientific Committee Panel Member Biología 3

ANID

Chile, 2023

Participation as an expert in the evaluation of Fondecyt grant applications year 2023
Scientific Committee Panel Member Biología 3

ANID

Chile, 2020

Participation as an expert in the evaluation of Fondecyt grant applications year 2020
Scientific Committee Panel Member Biología 3

ANID

Chile, 2019

Participation as an expert in the evaluation of Fondecyt grant applications year 2019


Developing a Fluorescent Inducible System for Free Fucose Quantification in Escherichia coli Nunez, Samantha; Barra, Maria; Garrido, Daniel Article ISI BIOSENSORS-BASEL (2023)
Engineered Bacteria for Short-Chain-Fatty-Acid-Repressed Expression of Biotherapeutic Molecules Serebrinsky-Duek, Kineret; Barra, Maria; Danino, Tal; Garrido, Daniel Article ISI MICROBIOLOGY SPECTRUM (2023)
Proteomic analyses of Bacteroides ovatus and Bifidobacterium longum in xylan bidirectional culture shows sugar cross-feeding interactions Vega-Sagardia, Marco; Delgado, Josu; Ruiz-Moyano, Santiago; Garrido, Daniel Article ISI FOOD RESEARCH INTERNATIONAL (2023)
Screening Microbial Interactions During Inulin Utilization Reveals Strong Competition and Proteomic Changes in <i>Lacticaseibacillus paracasei</i> M38 Vega-Sagardia, Marco; Cabezón, Eva Cebrián; Delgado, Josué; Ruiz-Moyano, Santiago; GARRIDO-CORTES, DANIEL ANTONIO Article ISI SCOPUS Probiotics and Antimicrobial Proteins (2023)
Structure of co-expression networks of Bifidobacterium species in response to human milk oligosaccharides Gonzalez-Morelo, Kevin J.; Galan-Vasquez, Edgardo; Melis, Felipe; Perez-Rueda, Ernesto; Garrido, Daniel Article ISI FRONTIERS IN MOLECULAR BIOSCIENCES (2023)
Characterization and Identification of Probiotic Features in Lacticaseibacillus Paracasei Using a Comparative Genomic Analysis Approach Torres-Miranda, Alexis; Melis-Arcos, Felipe; Garrido, Daniel Article ISI PROBIOTICS AND ANTIMICROBIAL PROTEINS (2022)
Comparative Genomics of Clostridium baratii Reveals Strain-Level Diversity in Toxin Abundance Silva-Andrade, Claudia; Martin, Alberto J.; Garrido, Daniel Article ISI MICROORGANISMS (2022)
Differences in the composition and predicted functions of the intestinal microbiome of obese and normal weight adult dogs Thomson, Pamela; Santibanez, Rodrigo; Rodriguez-Salas, Camila; Flores-Yanez, Carla; Garrido, Daniel Article ISI PEERJ (2022)
Editorial: Systems modeling: Approaches and applications-Volume II Garrido, Daniel; Martin, Alberto J. M.; Perez-Rueda, Ernesto Article ISI FRONTIERS IN MOLECULAR BIOSCIENCES (2022)
Metabolic Modeling and Bidirectional Culturing of Two Gut Microbes Reveal Cross-Feeding Interactions and Protective Effects on Intestinal Cells Hirmas, Belen; Gasaly, Naschla; Orellana, Guillermo; Vega-Sagardia, Marco; Saa, Pedro; Gotteland, Martin; Garrido, Daniel Article ISI MSYSTEMS (2022)
Modeling approaches for probing cross-feeding interactions in the human gut microbiome Saa, Pedro; Urrutia, Arles; Silva-Andrade, Claudia; Martin, Alberto J.; Garrido, Daniel Article ISI COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2022)
Assessment of Changes in the Oral Microbiome That Occur in Dogs with Periodontal Disease Santibanez, Rodrigo; Rodriguez-Salas, Camila; Flores-Yanez, Carla; Garrido, Daniel; Thomson, Pamela Article ISI VETERINARY SCIENCES (2021)
Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota Diaz, Romina; Torres-Miranda, Alexis; Orellana, Guillermo; Garrido, Daniel Article ISI Microorganisms (2021)
Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages Santibanez, Rodrigo; Garrido, Daniel; Martin, Alberto J. M. Article ISI BIOINFORMATICS (2020)
Editorial: Systems Modeling: Approaches and Applications Martin, Alberto J; Perez-Rueda, Ernesto; Garrido, Daniel Article ISI FRONTIERS IN MOLECULAR BIOSCIENCES (2020)
Engineered Probiotics for Detection and Treatment of Inflammatory Intestinal Diseases Barra, Maria; Danino, Tal; Garrido, Daniel Article ISI FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)
Inferring composition and function of the human gut microbiome in time and space: A review of genome-scale metabolic modelling tools Altamirano, Alvaro; Saa, Pedro A.; Garrido, Daniel Article ISI COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Molecular Insights Into O-Linked Glycan Utilization by Gut Microbes Gonzalez-Morelo, Kevin J.; Vega-Sagardia, Marco; Garrido, Daniel Article ISI FRONTIERS IN MICROBIOLOGY (2020)
Pleione: A tool for statistical and multi-objective calibration of Rule-based models Santibanez, Rodrigo; Garrido, Daniel; Martin, Alberto J. M. Article ISI SCOPUS SCIENTIFIC REPORTS (2019)
Short-term impact of sucralose consumption on the metabolic response and gut microbiome of healthy adults Thomson, Pamela; Santibanez, Rodrigo; Aguirre, Carolina; Galgani, Jose E.; Garrido, Daniel Article ISI SCOPUS BRITISH JOURNAL OF NUTRITION (2019)
Species Deletions from Microbiome Consortia Reveal Key Metabolic Interactions between Gut Microbes Gutierrez, Natalia; Garrido, Daniel Article ISI SCOPUS MSYSTEMS (2019)
Anti-inflammatory effect of microbial consortia during the utilization of dietary polysaccharides Thomson, Pamela; Medina, Daniel A.; Ortúzar, Verónica; Gotteland, Martín; Garrido, Daniel. Article ISI SCOPUS FOOD RESEARCH INTERNATIONAL (2018)
Draft genome sequences of Cylindrospermopsis raciborskii strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay Fuentes-Valdés, Juan J.; Soto-Liebe, Katia; Pérez-Pantoja, Danilo; Tamames, Javier; Belmar, Lucy; Pedrós-Alió, Carlos; Garrido, Daniel.; Vásquez, Mónica Article ISI SCOPUS Standards in Genomic Sciences (2018)
Evaluating the Capacity of Human Gut Microorganisms to Colonize the Zebrafish Larvae (Danio rerio) Valenzuela, Maria-Jose; Caruffo, Mario; Herrera, Yoani; Medina, Daniel A.; Coronado, Maximo; Feijoo, Carmen G.; Munoz, Salome; Garrido, Daniel.; Troncoso, Miriam.; Figueroa, Guillermo.; Toro, Magaly; Reyes-Jara, Angelica; Magne, Fabien; Nayarrete, Paola Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2018)
Human milk oligosaccharides and infant gut bifidobacteria: Molecular strategies for their utilization Thomson, Pamela; Medina, Daniel A.; Garrido, Daniel. Article ISI FOOD MICROBIOLOGY (2018)
Simulation and modeling of dietary changes in the infant gut microbiome Medina, Daniel A; Pinto, Francisco; Ortuzar, M Veronica; Garrido, Daniel. Article ISI FEMS MICROBIOLOGY ECOLOGY (2018)
Stochastic simulation of multiscale complex systems with PISKaS: A rule-based approach Pérez-Acle, Tomás; Fuenzalida, Ignacio; Martin, Alberto J. M.; Santibañez, Rodrigo; Avaria, Rodrigo; Bernardin, Alejandro; Bustos, Alvaro M.; Garrido, Daniel.; Dushoff, Jonathan; Liu, James H. Article ISI SCOPUS BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2018)
Distinct patterns in the gut microbiota after surgical or medical therapy in obese patients Medina, Daniel A.; Pedreros, Juan P.; Turiel, Dannae; Quezada, Nicolas; Pimentel, Fernando; Escalona, Alex; Garrido, Daniel Article ISI SCOPUS PEERJ (2017)
Modeling Metabolic Interactions in a Consortium of the Infant Gut Microbiome Pinto, Francisco; Medina, Daniel A.; Perez-Correa, J. Ricardo; Garrido, Daniel Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2017)
Prebiotics Mediate Microbial Interactions in a Consortium of the Infant Gut Microbiome Medina, Daniel; Pinto, Francisco; Ovalle, Aline; Thomson, Pamela; Garrido, Daniel Article ISI SCOPUS INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp longum SC596 Garrido, Daniel; Ruiz-Moyano, Santiago; Kirmiz, Nina; Davis, Jasmine C.; Totten, Sarah M.; Lemay, Danielle G.; Ugalde, Juan A.; German, J. Bruce; Lebrilla, Carlito B.; Mills, David A. Article ISI SCOPUS SCIENTIFIC REPORTS (2016)
Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community Davis, Jasmine C. C.; Totten, Sarah M.; Huang, Julie O.; Nagshbandi, Sadaf; Kirmiz, Nina; Garrido, Daniel A.; Lewis, Zachery T.; Wu, Lauren D.; Smilowitz, Jennifer T.; German, J. Bruce; Mills, David A.; Lebrilla, Carlito B. Article ISI SCOPUS MOLECULAR CELLULAR PROTEOMICS (2016)
Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria Garrido, D.; Ruiz-Moyano, S; Lemay, DG; Sela, DA; German, JB; Mills, DA Article ISI SCOPUS SCIENTIFIC REPORTS (2015)
Glycosylated proteins preserved over millennia: N-glycan analysis of Tyrolean Iceman, Scythian Princess and Warrior Ozcan, Sureyya; Kim, Bum Jin; Ro, Grace; Kim, Jae-Han; Bereuter, Thomas L.; Reiter, Christian; Dimapasoc, Lauren; Garrido, Daniel; Mills, David A.; Grimm, Rudolf; Lebrilla, Carlito B.; An, Hyun Joo Article ISI SCIENTIFIC REPORTS (2014)
Hydrolysis of milk gangliosides by infant-gut associated bifidobacteria determined by microfluidic chips and high-resolution mass spectrometry Lee, H; Garrido, D.; Mills, DA; Barile, D Article ISI SCOPUS ELECTROPHORESIS (2014)
Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications Garrido, D.; Dallas, D. C.; Mills, D. A. Article ISI/SCOPUS Microbiology (2013)
Proteomic Analysis of Bifidobacterium longum subsp. infantis Reveals the Metabolic Insight on Consumption of Prebiotics and Host Glycans Kim, Jae-Han; An, Hyun Joo; Garrido, Daniel; German, J. Bruce; Lebrilla, Carlito B.; Mills, David A.; de Crécy-Lagard, Valerie Article ISI/SCOPUS PLOS ONE (2013)
Utilization of galactooligosaccharides by Bifidobacterium longum subsp. infantis isolates Garrido, Daniel; Ruiz-Moyano, Santiago; Jimenez-Espinoza, Rogelio; Eom, Hyun-Ju; Block, David E.; Mills, David A. Article ISI/SCOPUS Food Microbiology (2013)
Variation in Consumption of Human Milk Oligosaccharides by Infant Gut-Associated Strains of Bifidobacterium breve Ruiz-Moyano, S.; Totten, S. M.; Garrido, D. A.; Smilowitz, J. T.; German, J. B.; Lebrilla, C. B.; Mills, D. A. Article SCOPUS Applied and Environmental Microbiology (2013)
A Molecular Basis for Bifidobacterial Enrichment in the Infant Gastrointestinal Tract Garrido, D.; Barile, D.; Mills, D. A. Article ISI/SCOPUS Advances in Nutrition (2012)
Bifidobacterium longum subsp. infantis ATCC 15697 ?-Fucosidases Are Active on Fucosylated Human Milk Oligosaccharides Sela, D. A.; Garrido, D.; Lerno, L.; Wu, S.; Tan, K.; Eom, H.-J.; Joachimiak, A.; Lebrilla, C. B.; Mills, D. A. Article ISI/SCOPUS APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Endo-β- N -acetylglucosaminidases from Infant Gut-associated Bifidobacteria Release Complex N -glycans from Human Milk Glycoproteins Garrido, Daniel; Nwosu, Charles; Ruiz-Moyano, Santiago; Aldredge, Danielle; German, J. Bruce; Lebrilla, Carlito B.; Mills, David A. Article ISI/SCOPUS MOLECULAR & CELLULAR PROTEOMICS (2012)
Release and utilization of N-acetyl-d-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis Garrido, Daniel; Ruiz-Moyano, Santiago; Mills, David A. Article ISI/SCOPUS Anaerobe (2012)
Oligosaccharide Binding Proteins from Bifidobacterium longum subsp. infantis Reveal a Preference for Host Glycans Garrido, Daniel; Kim, Jae Han; German, J. Bruce; Raybould, Helen E.; Mills, David A.; Uversky, Vladimir Article ISI/SCOPUS PLOS ONE (2011)
Study of the coumarate decarboxylase and vinylphenol reductase activities of Dekkera bruxellensis (anamorph Brettanomyces bruxellensis) isolates GODOY, L.; Garrido, D.; Martínez C; Saavedra J.; Combina M.; GANGA, MA Article ISI SCOPUS LETTERS IN APPLIED MICROBIOLOGY (2009)
Taqman real-time PCR for the detection and enumeration of Saccharomyces cerevisiae in wine Salinas, F.; Garrido, D.; Ganga A.; Veliz, G; Martínez C Article ISI SCOPUS FOOD MICROBIOLOGY (2009)
Characterization of human intestinal bifidobacteria using competitive PCR and PCR-TTGE Mangin, I; Suau, A; Magne, F; Garrido, D.; Gotteland M.; Neut, C; Pochart, P Article ISI SCOPUS FEMS MICROBIOLOGY ECOLOGY (2006)
Effect of a milk formula with prebiotics on the intestinal microbiota of infants after an antibiotic treatment Brunser O.; Gotteland M.; Cruchet S.; Figueroa G.; Garrido, D.; Steenhout, P Article ISI SCOPUS PEDIATRIC RESEARCH (2006)
Modulation of the fecal microbiota by the intake of a Lactobacillus johnsonii La1-containing product in human volunteers Garrido, D.; Suau, A; Pochart, P; Cruchet S.; Gotteland M. Article ISI SCOPUS FEMS MICROBIOLOGY LETTERS (2005)


Gut microbiota and Marine Phenolics Nunez, Samantha; Urrutia, Arles; Garrido, Daniel BookSection (2023)
Probiotics, Microbiome and the Concept of Cross-Feeding Torres-Miranda, Alexis; Vega-Sagardia, Marco; Garrido, Daniel; Gilbetic, Marco BookSection (2022)
Recent advances in the infant gut microbiome and health Diaz, Romina; Garrido, Danel; Fantuch, Joel BookSection (2019)
The Gut Microbiome after Bariatric Surgery Solar, Camila; Escalona, Alez; Garrido, Daniel.; Joel Faintuch Salomao Faintuch BookSection (2019)
Human Milk Oligosaccharides and Health Promotion Through the Gut Microbiome Thomson, Pamela., Garrido, Daniel. BookSection (2017)


Emergent Roles of Infant Gut Microbes during Utilization of Human Milk Oligosaccharides Garrido, Daniel ConferencePoster (2023)
Gene regulatory network for infant Bifidobacterium species Melis, Felipe; Arita M.; Daniel Garrido ConferencePoster (2023)
Impact of microbial consortia producing neuroprotective metabolites in an animal model of Parkinson’s disease in Drosophila melanogaster Ovalle, Aline; Sierralta, Jimena Alejandra; Daniel Garrido ConferencePoster (2023)
Interacciones ecológicas en el microbioma intestinal: aplicaciones y psicobióticos Garrido, Daniel ConferencePoster (2023)
Metabolic interactions and gene expression between members of gut microbiota using glycomacropeptide Gonzalez-Morelo, Kevin J.; Daniel Garrido ConferencePoster (2023)
Metabolic Interactions Between different Members of the Human Gut Microbiota using Glycomacropeptide Gonzalez-Morelo, Kevin J.; Daniel Garrido ConferencePoster (2022)
Metabolic interactions in the gut microbiome: models of cooperation and competition Garrido, Daniel. ConferencePoster (2022)
Systematic use of gene expression data for the construction of gene regulatory networks for representative species of the genus Bifidobacterium Melis, Felipe; Daniel Garrido ConferencePoster (2022)
Biosensores bacterianos para la detección de fucosa y ácido siálico libre . Barra, MJ.; Daniel Garrido ConferencePoster (2021)
Clostridium baratii: Comparative Genomics and Botulism Toxin Production. Silva-Andrade, Claudia; Alberto J. Martin; Daniel Garrido ConferencePoster (2021)
Comparative genomics of Clostridia isolated from gut microbiota Silva-Andrade, Claudia; Alberto J. Martin; Daniel Garrido ConferencePoster (2021)
Utilization of Glycomacropeptide-derived O-glycans by Representative Members of the Gut Microbiota Gonzalez-Morelo, Kevin J.; Daniel Garrido ConferencePoster (2021)
• Analysis Of Cross-feeding Interactions During Prebiotic Utilization Reveals Inulin-degrading Lactobacillus Casei M38 Supporting The Growth Of Bacteroides Vega-Sagardia, Marco; Daniel Garrido ConferencePoster (2021)


Composición, consorcios bacterianos, y usos para la prevención y/o tratamiento de enfermedades neurodegenerativas, enfermedades mentales o trastornos psiquiátricos Ovalle, Aline; Sierralta, Jimena A.; Garrido, Daniel Patent (2023)
METHODS AND COMPOSITIONS FOR IMPROVED DIGESTION OF MILK OLIGOSACCHARIDES Mills, David; Garrido, Daniel.; Ruiz-Moyano, Santiago; Lebrilla, Carlito B.; German, J. Bruce Patent Grant Awarded (2019)
Enzymes and methods for cleaving N-glycans from glycoproteins Garrido, Daniel.; Lebrilla, Carlito B.; German, J. Bruce; Mills, David A. Patent Grant Awarded in 2016 (2016)


Model-Guided Analysis of Microbial Interactions Leading to Colonization Resistance and Dysbiosis in the Gut Microbiota Garrido, Daniel; Martin, Alberto J; Saa, Pedro Proyecto (2023)
PhageStop, una formulación de un cóctel de distintos bacteriófagos con acción lítica de precisión contra Salmonella Infantis MDR en carne de pollo Andrea I Moreno Switt; Dacil Rivera O.; Marlene Rosales, Ines; Garrido, Daniel Proyecto (2023)
Multiomics analysis of metabolic interactions in a synthetic consortium of gut microbes with butyrogenic effect Garrido, Daniel; Arland Hotchkiss - USDA Proyecto (2022)
Gene Regulatory Networks in Gut Microbiome Consortia Daniel Garrido; Ernesto Perez-Rueda Proyecto (2020)
Design of anti-inflammatory gene circuits for gut microbiome therapeutics Garrido, Daniel.; Danino, Tal Proyecto 10.000.000 intramural seed funding with Columbia University. (2019)
Identification and Modeling of Cross-Feeding Interactions in the Gut Microbiome for Designing Microbial Communities Garrido, Daniel.; Martín, Alberto J.; Saa, Pedro Proyecto Raised 228.000.000 (2019)
Implementing a Multimodal Fluorescence Reader for Research in Bioengineering. Daniel Garrido; Alberto J.M. Martin; Saa, Pedro Proyecto Implementación de un lector de fluorescencia multicanal con anaerobiosis para investigación y docencia. $79.672.493 (2019)
Modeling metabolic interactions of infant gut microbes during consumption of human milk oligosaccharides Garrido, Daniel; Godoy, Liliana; Mills, D.A. Proyecto US14.000 (2019)
Design of Microbial Consortia for Treatment of Intestinal Inflammatory Diseases Garrido, Daniel.; Gotteland, Martin; Agosín, Eduardo; Pérez, Ricardo Proyecto Raised 150.000.000. (2017)
Diseño de Consorcios Microbianos para el Tratamiento de Enfermedades Inflamatorias del Intestino FONDEF (ID16I10045) Proyecto 2017-2018 Inv. Responsable
EVALUACIÓN DEL EFECTO DE LA SUCRALOSA SOBRE LA COMPOSICIÓN Y FUNCIÓN DEL MICROBIOMA INTESTINAL EN SUJETOS SANOS FONDECYT (3170609) Proyecto 2017-2020 Inv. Patrocinante
“Evaluación del efecto de la sucralosa sobre la composición y función del microbioma intestinal en sujetos sanos” Thomson, Pamela; Garrido, Daniel Proyecto (2017)
Efecto de endulzantes no nutritivos sobre el metabolismo y la microbiota intestinal UC (I2015) Proyecto 2016-2018 Director(a)
Efecto de endulzantes no nutritivos sobre el metabolismo y la microbiota intestinal Garrido, Daniel.; Galgani, José; Aguirre, Carolina Proyecto Raised 10.000.000, intramural funding (2016)
Microbiome engineering and synthetic biology applications for health Seed Fund PUC-Columbia University (102016) Proyecto 2016-2017 Director(a)
Synthetic biology and microbiome applications for health. Design of biological sensors for intestinal delivery Garrido, Daniel.; Danino, Tal Proyecto Intramural funding, 10.000.000 (2016)
EVALUACIÓN METAGENÓMICA DE LOS CAMBIOS EN LA COMPOSICIÓN Y FUNCIÓN DE LA MICROBIOTA INTESTINAL ASOCIADOS AL TRATAMIENTO DE LA OBESIDAD FONDECYT (3160525) Proyecto 2015-2018 Inv. Patrocinante
Effect of Bariatric Surgery on the Intestinal Microbiota Concurso Interdisciplina UC (-) Proyecto 2014-2016 Coinvestigador(a)
A defined in vitro fermentation system to study alterations of the intestinal microbiota Garrido, Daniel Proyecto Raised 110.000.000 (2013)
A DEFINED IN-VITRO FERMENTATION SYSTEM TO EVALUATE THE IMPACT OF ALTRATIONS OF THE INTESTINAL MICROBIOTA FONDECYT (11130518) Proyecto 2013-2017 Inv. Responsable
Effect of Bariatric Surgery on the Intestinal Microbiota Garrido, Daniel; Escalona, Alex; Pimentel, Fernando Proyecto Raised 10.000.000, intramural funding (2013)
Evaluación metagenómica de los cambios en la composición y función de la microbiota intestinal asociados al tratamiento de la obesidad Medina, Daniel; Garrido, Daniel Proyecto (0)


Effect of Sucralose Intake on Human and Mouse/Rat Gut Microbiota Composition: A Systematic Review and Meta-Analysis Chen, Chung-Yu; Tien, Cheng-Hao; Chen, Yue-Hwa; Garrido, Daniel; Farzi, Aitak; Herzog, Herbert; Fan, Hsien-Yu; Chen, Yang-Ching Review ISI FOOD REVIEWS INTERNATIONAL (2023)

Daniel Garrido

Associate Professor

Chemical and Bioprocess Engineering

Pontificia Universidad Católica de Chile

Santiago, Chile

Alberto Martin

Associate professor

Centro Ciencia & Vida

Universidad San Sebastián

Santiago, Chile

Daniel Medina

Investigador

Medicina Veterinaria

Universidad San Sebastián

Puerto Montt, Chile

MARTIN GOTTELAND

Profesor Titular

Facultad de Medicina

Universidad de Chile

Santiago, Chile

Pedro Saa

Profesor Asistente

Departmento de Ingenieria Quimica y Bioprocesos

Pontificia Universidad Catolica de Chile

Santiago, Chile

Fabien MAGNE

Profesor asistante

UNIVERSIDAD DE CHILE

Chile

Pamela Thomson

assistant professor

Universidad Andrés Bello

Santiago, Chile

Claudio Martinez

Profesor Titular

Departamento de Ciencia y Tecnología de Alimentos

Universidad de Santiago de Chile

Santiago, Chile

MARIA GANGA

academico jornada completa

Departamento en Ciencia y Tecnologia de los Alimentos

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

Juan Ugalde

Assistant Professor

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

Carmen Feijóo

Profesor asociado

UNIVERSIDAD ANDRES BELLO

Santiago, Chile

JOSE GALGANI

ASSOCIATE PROFESSOR

NUTRITION, DIABETES AND METABOLISM; AND UDA-CIENCIAS DE LA SALUD, NUTRICION Y DIETETICA

PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE

Santiago, Chile

José Pérez

Profesor Titular

Ingeniería Química y Bioprocesos

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Santiago, Chile

Angelica Reyes

Profesor Asociado

INTA UNIVERSIDAD DE CHILE

Santiago, Chile

Paola Navarrete

Associate Professor

INTA

Universidad de Chile

Santiago, Chile

Lucy Belmar

Profesor asistente adjunto

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

Magaly Toro

Profesor Asistente

UNIVERSIDAD DE CHILE

Chile

Mario Caruffo

Investigador Post-doctoral

Inmunología en Peces

Universidad Andrés Bello

Santiago, Chile

Guillermo Figueroa

Profesor Asociado

Laboratorio: Microbiología de Alimentos y Probióticos

INTA, Universidad de Chile

Santiago, Chile

Alejandro Bernardin

Investigador postdoctoral

Fundación Ciencia y Vida

Santiago, Chile

Natalia Gutiérrez

Supervisora de estudios sensoriales

Evaluación Sensorial

DICTUC

Macul, Chile

Katia Soto

Académica

Universidad de Chile

Santiago, Chile

Luz Vásquez

Profesor Asociado

Genética Molecular y Microbiología

Pontificia Universidad Católica de Chile

Santiago, Chile

Danilo Pérez

Investigador

Programa Institucional de Fomento a la Investigación, Desarrollo e Innovación

UNIVERSIDAD TECNOLÓGICA METROPOLITANA

Santiago, Chile

Francisco Salinas

Profesor Asociado

Instituto de Bioquímica y Microbiolgía

Universidad Austral de Chile

Valdivia, Chile

Liliana Godoy

Profesor Asociado

Fruticultura y Enología

Pontificia Universidad Católica de Chile

Santiago, Chile

Daniel Antonio Garrido Cortes

Líneas de Investigación

Educación

Food Science, emphasis in Biotechnology, UNIVERSITY OF CALIFORNIA- DAVIS. Estados Unidos, 2012

Engineering in Molecular Biotechnology, UNIVERSIDAD DE CHILE. Chile, 2005

University Teaching, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2018

Experiencia Académica

Assistant Professor Full Time

Postdoctoral researcher Full Time

Associate Professor Full Time

Experiencia Profesional

Postdoctoral Researcher Full Time

Consultant Part Time

Teaching Assistant Part Time

Director Departamento Full Time

Jefe Major en Ingeniería Biológica Full Time

Miembro Comité Institucional Bioseguridad Part Time

Formación de Capital Humano

Difusión y Transferencia

Premios y Distinciones

Panamerican Bimbo Award

Young Investigator Oral Presentation Award

National Dairy Leadership Scholarship Award.

Fulbright-CONICYT scholarship

UCDavis Chile Fellow

Malaspina International Scholar Travel (MIST) 2019 Award

Associate Editor mSystems

Associate Editor Frontiers in Microbiology

Associate Editor - Probiotics and Antimicrobial Proteins

Excellence in Research Award

Scientific Committee Panel Member Biología 3

Scientific Committee Panel Member Biología 3

Scientific Committee Panel Member Biología 3

Article (49)

BookSection (5)

ConferencePoster (13)

Patent (3)

Proyecto (22)

Diseño de Consorcios Microbianos para el Tratamiento de Enfermedades Inflamatorias del Intestino

EVALUACIÓN DEL EFECTO DE LA SUCRALOSA SOBRE LA COMPOSICIÓN Y FUNCIÓN DEL MICROBIOMA INTESTINAL EN SUJETOS SANOS

Efecto de endulzantes no nutritivos sobre el metabolismo y la microbiota intestinal

Microbiome engineering and synthetic biology applications for health

EVALUACIÓN METAGENÓMICA DE LOS CAMBIOS EN LA COMPOSICIÓN Y FUNCIÓN DE LA MICROBIOTA INTESTINAL ASOCIADOS AL TRATAMIENTO DE LA OBESIDAD

Effect of Bariatric Surgery on the Intestinal Microbiota

A DEFINED IN-VITRO FERMENTATION SYSTEM TO EVALUATE THE IMPACT OF ALTRATIONS OF THE INTESTINAL MICROBIOTA

Review (1)